Yayınlar & Eserler

Yayın Ağı
Makaleler 22
Tümü (22)
SCI-E, SSCI, AHCI (19)
SCI-E, SSCI, AHCI, ESCI (21)
Scopus (22)
TRDizin (1)

1. Biomanufacturing Potential of Streamlined Cells

Lara A. R., Andersen M. B., Madsen A. A. V., Fønss K. G., Irla M., TAYMAZ NİKEREL H., et al.
Biotechnology and Bioengineering , cilt.122, sa.12, ss.3309-3318, 2025 (SCI-Expanded, Scopus)

2. Transport-controlled growth decoupling for self-induced protein expression with a glycerol-repressible genetic circuit

Lara A. R., Kunert F., Vandenbroucke V., TAYMAZ NİKEREL H., Martínez L. M., Sigala J., et al.
Biotechnology and Bioengineering , cilt.121, sa.6, ss.1789-1802, 2024 (SCI-Expanded, Scopus)

3. Increasing the Pentose Phosphate Pathway Flux to Improve Plasmid DNA Production in Engineered E. coli

de la Cruz M., Kunert F., TAYMAZ NİKEREL H., Sigala J., Gosset G., Büchs J., et al.
Microorganisms , cilt.12, sa.1, 2024 (SCI-Expanded, Scopus)

4. Vitreoscilla haemoglobin: A tool to reduce overflow metabolism

TAYMAZ NİKEREL H., Lara A. R.
Microorganisms , cilt.10, sa.1, 2022 (SCI-Expanded, Scopus)

5. Doxorubicin-induced transcriptome meets interactome: identification of new drug targets

TAYMAZ NİKEREL H.
Turkish Journal of Biology , cilt.46, sa.2, ss.137-144, 2022 (SCI-Expanded, Scopus, TRDizin)

6. Side effect prediction based on drug-induced gene expression profiles and random forest with iterative feature selection

Cakir A., Tuncer M., TAYMAZ NİKEREL H., Ulucan O.
Pharmacogenomics Journal , cilt.21, sa.6, ss.673-681, 2021 (SCI-Expanded, Scopus)

7. Integration of fluxome and transcriptome data in: Saccharomyces cerevisiae offers unique features of doxorubicin and imatinib

TAYMAZ NİKEREL H.
Molecular Omics , cilt.17, sa.5, ss.783-789, 2021 (SCI-Expanded, Scopus)

8. Time-dependent re-organization of biological processes by the analysis of the dynamic transcriptional response of yeast cells to doxorubicin

KARABEKMEZ M. E., TAYMAZ NİKEREL H., Eraslan S., Kirdar B.
Molecular Omics , cilt.17, sa.4, ss.572-582, 2021 (SCI-Expanded, Scopus)

9. Insights into the Mechanism of Anticancer Drug Imatinib Revealed through Multi-Omic Analyses in Yeast

TAYMAZ NİKEREL H., Eraslan S., Klrdar B.
OMICS A Journal of Integrative Biology , cilt.24, sa.11, ss.667-678, 2020 (SCI-Expanded, Scopus) Sürdürülebilir Kalkınma

10. Doxorubicin induces an extensive transcriptional and metabolic rewiring in yeast cells

TAYMAZ NİKEREL H., KARABEKMEZ M. E., Eraslan S., Kırdar B.
Scientific Reports , cilt.8, sa.1, 2018 (SCI-Expanded, Scopus) Creative Commons License

11. Comparative fluxome and metabolome analysis for overproduction of succinate in Escherichia coli

TAYMAZ NİKEREL H., De Mey M., Baart G. J., Maertens J., Foulquié-Moreno M. R., Charlier D., et al.
Biotechnology and Bioengineering , cilt.113, sa.4, ss.817-829, 2016 (SCI-Expanded, Scopus)

12. Editorial: Quantitative systems biology for engineering organisms and pathways

TAYMAZ NİKEREL H., Lara A. R.
Frontiers in Bioengineering and Biotechnology , cilt.4, sa.MAR, 2016 (Scopus) Creative Commons License

13. Genome-wide transcriptional response of Saccharomyces cerevisiae to stress-induced perturbations

TAYMAZ NİKEREL H., Cankorur-Cetinkaya A., Kirdar B.
Frontiers in Bioengineering and Biotechnology , cilt.4, sa.FEB, 2016 (Scopus) Creative Commons License

14. Effect of growth rate on plasmid DNA production and metabolic performance ofengineered Escherichia coli strains

Wunderlich M., TAYMAZ NİKEREL H., Gosset G., Ramírez O. T., Lara A. R.
Journal of Bioscience and Bioengineering , cilt.117, sa.3, ss.336-342, 2014 (SCI-Expanded, Scopus)

15. Changes in substrate availability in Escherichia coli lead to rapid metabolite, flux and growth rate responses

TAYMAZ NİKEREL H., De Mey M., Baart G., Maertens J., Heijnen J. J., van Gulik W.
Metabolic Engineering , cilt.16, sa.1, ss.115-129, 2013 (SCI-Expanded, Scopus)

16. Fast sampling of the cellular metabolome

Van Gulik W. M., Canelas A. B., TAYMAZ NİKEREL H., Douma R. D., De Jonge L. P., Heijnen J. J.
Methods in Molecular Biology , cilt.881, ss.279-306, 2012 (Scopus)

17. Escherichia coli responds with a rapid and large change in growth rate upon a shift from glucose-limited to glucose-excess conditions

TAYMAZ NİKEREL H., van Gulik W. M., Heijnen J. J.
Metabolic Engineering , cilt.13, sa.3, ss.307-318, 2011 (SCI-Expanded, Scopus)

18. Genome-derived minimal metabolic models for Escherichia coli MG1655 with estimated in vivo respiratory ATP stoichiometry

TAYMAZ NİKEREL H., Borujeni A. E., Verheijen P. J., Heijnen J. J., van Gulik W. M.
Biotechnology and Bioengineering , cilt.107, sa.2, ss.369-381, 2010 (SCI-Expanded, Scopus)

19. Catching prompt metabolite dynamics in Escherichia coli with the BioScope at oxygen rich conditions

De Mey M., TAYMAZ NİKEREL H., Baart G., Waegeman H., Maertens J., Heijnen J. J., et al.
Metabolic Engineering , cilt.12, sa.5, ss.477-487, 2010 (SCI-Expanded, Scopus)

20. Fast dynamic response of the fermentative metabolism of Escherichia coli to aerobic and anaerobic glucose pulses

Lara A. R., TAYMAZ NİKEREL H., Mashego M. R., Van Gulik W. M., Heijnen J. J., Ramírez O. T., et al.
Biotechnology and Bioengineering , cilt.104, sa.6, ss.1153-1161, 2009 (SCI-Expanded, Scopus)

21. Development and application of a differential method for reliable metabolome analysis in Escherichia coli

TAYMAZ NİKEREL H., de Mey M., Ras C., ten Pierick A., Seifar R. M., van Dam J. C., et al.
Analytical Biochemistry , cilt.386, sa.1, ss.9-19, 2009 (SCI-Expanded, Scopus) Creative Commons License

22. Sequence variations within the genes related to hemostatic imbalance and their impact on coronary artery disease in Turkish population

TAYMAZ NİKEREL H., Erarslan S., TOKSOY ÖNER E., Alkan T., Aǧirbaşli M., Kirdar B.
Thrombosis Research , cilt.119, sa.1, ss.55-62, 2007 (SCI-Expanded, Scopus)
Kitaplar 2

1. Fast sampling of the cellular Metabolome

Van Gulik W. M., Canelas A. B., TAYMAZ NİKEREL H., Douma R. D., De Jonge L. P., Heijnen J. J.
Methods in Molecular Biology, Humana Press, Inc. , ss.11-39, 2022

2. A thermodynamic analysis of dicarboxylic acid production in microorganisms

TAYMAZ NİKEREL H., Jamalzadeh E., Espah Borujeni A., Verheijen P. J., van Gulik W. M., Heijnen J. J.
Biothermodynamics: The role of Thermodynamics in Biochemical Engineering, von Stockar U, van der Wielen L, Editör, EPFL-Press, Lozan, ss.547-579, 2013
Metrikler

Yayın

55

Yayın (Scopus)

23

Atıf (Scopus)

775

H-İndeks (Scopus)

12

Proje

9

Açık Erişim

4
BM Sürdürülebilir Kalkınma Amaçları
SDG 3: AMAÇ 3: SAĞLIKLI BİREYLER
SDG 12: AMAÇ 12: SORUMLU ÜRETİM VE TÜKETİM